Source code for penman.layout

# -*- coding: utf-8 -*-

"""
Interpreting trees to graphs and configuring graphs to trees.

In order to serialize graphs into the PENMAN format, a tree-like
layout of the graph must be decided. Deciding a layout includes
choosing the order of the edges from a node and the paths to get to a
node definition (the position in the tree where a node's concept and
edges are specified). For instance, the following graphs for "The dog
barked loudly" have different edge orders on the ``b`` node::

  (b / bark-01           (b / bark-01
     :ARG0 (d / dog)        :mod (l / loud)
     :mod (l / loud))       :ARG0 (d / dog))

With re-entrancies, there are choices about which location of a
re-entrant node gets the full definition with its concept (node
label), etc. For instance, the following graphs for "The dog tried to
bark" have different locations for the definition of the ``d`` node::

  (t / try-01              (t / try-01
     :ARG0 (d / dog)          :ARG0 d
     :ARG1 (b / bark-01       :ARG1 (b / bark-01
        :ARG0 d))                :ARG0 (d / dog))

With inverted edges, there are even more possibilities, such as::

  (t / try-01                (t / try-01
     :ARG0 (d / dog             :ARG1 (b / bark-01
        :ARG0-of b)                :ARG0 (d / dog
     :ARG1 (b / bark-01))             :ARG0-of t)))

This module introduces two epigraphical markers so that a pure graph
parsed from PENMAN can retain information about its tree layout
without altering its graph properties. The first marker type is
:class:`Push`, which is put on a triple to indicate that the triple
introduces a new node context, while the sentinel :data:`POP`
indicates that a triple is at the end of one or more node contexts.
These markers only work if the triples in the graph's data are
ordered. For instance, one of the graphs above (repeated here) has the
following data::

  PENMAN                 Graph                            Epigraph
  (t / try-01            [('t', ':instance', 'try-01'),   :
     :ARG0 (d / dog)      ('t', ':ARG0', 'd'),            : Push('d')
     :ARG1 (b / bark-01   ('d', ':instance', 'dog'),      : POP
        :ARG0 d))         ('t', ':ARG1', 'b'),            : Push('b')
                          ('b', ':instance', 'bark-01'),  :
                          ('b', ':ARG0', 'd')]            : POP
"""

from typing import Union, Mapping
import copy
import logging

from penman.exceptions import LayoutError
from penman.types import Variable
from penman.epigraph import Epidatum
from penman.tree import (Tree, Node, is_atomic)
from penman.graph import (Graph, CONCEPT_ROLE)
from penman.model import Model


logger = logging.getLogger(__name__)


_Nodemap = Mapping[Variable, Union[Node, None]]


# Epigraphical markers

[docs]class LayoutMarker(Epidatum): """Epigraph marker for layout choices."""
[docs]class Push(LayoutMarker): """Epigraph marker to indicate a new node context.""" __slots__ = 'variable', def __init__(self, variable): self.variable = variable def __repr__(self): return 'Push({})'.format(self.variable)
class _Pop(LayoutMarker): """Epigraph marker to indicate the end of a node context.""" __slots__ = () def __repr__(self): return 'POP' #: Epigraphical marker to indicate the end of a node context. POP = _Pop() # Tree to graph interpretation ################################################
[docs]def interpret(t: Tree, model: Model = None) -> Graph: """ Interpret tree *t* as a graph using *model*. """ if model is None: model = Model() top, triples, epidata = _interpret_node(t.node, model) g = Graph(triples, top=top, epidata=epidata, metadata=t.metadata) logger.info('Interpreted: %s', g) return g
def _interpret_node(t: Node, model: Model): triples = [] epidata = {} var, edges = t for role, target, epis in edges: if role == '/': role = CONCEPT_ROLE # atomic targets if is_atomic(target): child = () target_var = target # nested nodes else: child = target target_var = target[0] triple = model.deinvert((var, role, target_var)) triples.append(triple) epidata[triple] = epis # recurse to nested nodes if child: epidata[triple].append(Push(target_var)) _, _triples, _epis = _interpret_node(child, model) triples.extend(_triples) epidata.update(_epis) epidata[triples[-1]].append(POP) return var, triples, epidata # Graph to tree configuration #################################################
[docs]def configure(g: Graph, top: Variable = None, model: Model = None, strict: bool = False) -> Tree: """ Create a tree from a graph by making as few decisions as possible. """ if model is None: model = Model() node, data, nodemap = _configure(g, top, model, strict) # if any data remain, the graph was not properly annotated for a tree while data: skipped, var, data = _find_next(data, nodemap) data_count = len(data) if var is None or data_count == 0: raise LayoutError('possibly disconnected graph') _configure_node(var, data, nodemap, model) if len(data) >= data_count: raise LayoutError('possible cycle in configuration') data = skipped + data # remove any superfluous POPs while data and data[-1] is POP: data.pop() tree = Tree(node, metadata=g.metadata) logger.debug('Configured: %s', tree) return tree
def _configure(g, top, model, strict): """ Create the tree that can be created without any improvising. """ if len(g.triples) == 0: return (g.top, []), [], {} nodemap: _Nodemap = {var: None for var in g.variables()} if top is None: top = g.top if top not in nodemap: raise LayoutError('top is not a variable: {!r}'.format(top)) nodemap[top] = (top, []) data = list(reversed(_preconfigure(g, strict))) node = _configure_node(top, data, nodemap, model) return node, data, nodemap def _preconfigure(g, strict): """ Arrange the triples and epidata for ordered traversal. Also perform some basic validation. """ data = [] epidata = g.epidata pushed = set() for triple in g.triples: push, pops, others = None, [], [] for epi in epidata.get(triple, []): if isinstance(epi, Push): if push is not None or epi.variable in pushed: if strict: raise LayoutError( "multiple node contexts for '{}'" .format(epi.variable)) pass # change to 'continue' to disallow multiple contexts if epi.variable not in (triple[0], triple[2]): if strict: raise LayoutError( "node context '{}' invalid for triple: {}" .format(epi.variable, triple)) continue pushed.add(epi.variable) push = epi elif epi is POP: pops.append(epi) else: others.append(epi) if strict and push and pops: raise LayoutError( 'incompatible node context changes on triple: {}' .format(triple)) data.append((triple, others, push)) data.extend(pops) return data def _configure_node(var, data, nodemap, model): """ Configure a node and any descendants. Side-effects: * *data* is modified * *nodemap* is modified """ node = nodemap[var] edges = node[1] while data: datum = data.pop() if datum is POP: break triple, epidata, push = datum if triple[0] == var: source, role, target = triple elif triple[2] == var: source, role, target = model.invert(triple) else: # misplaced triple data.append(datum) break if push and push.variable == target: nodemap[push.variable] = (push.variable, []) target = _configure_node( push.variable, data, nodemap, model) elif target in nodemap and nodemap[target] is None: # site of potential node context nodemap[target] = node if role == CONCEPT_ROLE: role = '/' index = 0 else: index = len(edges) edges.insert(index, (role, target, epidata)) return node def _find_next(data, nodemap): """ Find the next node context; establish if necessary. """ var = None for i in range(len(data) - 1, -1, -1): datum = data[i] if datum is POP: continue source, _, target = datum[0] if source in nodemap and _get_or_establish_site(source, nodemap): var = source break elif target in nodemap and _get_or_establish_site(target, nodemap): var = target break pivot = i + 1 return data[pivot:], var, data[:pivot] def _get_or_establish_site(var, nodemap): """ Turn a variable target into a node context. """ # first check if the var is available at all if nodemap[var] is not None: _var, edges = nodemap[var] # if the mapped node's var doesn't match it can be established if var != _var: node = (var, []) nodemap[var] = node for i in range(len(edges)): # replace the variable in the tree with the new node if edges[i][1] == var: edge = list(edges[i]) edge[1] = node edges[i] = tuple(edge) else: pass # otherwise the node already exists so we're good return True # var is not yet available return False
[docs]def reconfigure(g: Graph, top: Variable = None, model: Model = None, strict: bool = False) -> Tree: """ Create a tree from a graph after any discarding layout markers. """ p = copy.deepcopy(g) for epilist in p.epidata.values(): epilist[:] = [epi for epi in epilist if not isinstance(epi, LayoutMarker)] return configure(p, top=top, model=model, strict=strict)
[docs]def has_valid_layout(g: Graph, top: Variable = None, model: Model = None, strict: bool = False) -> bool: """ Return True if *g* contains the information for a valid layout. Having a valid layout means that the graph data allows a depth-first traversal that reconstructs a spanning tree used for serialization. """ if model is None: model = Model() tree, data, nodemap, variables = _configure(g, top, model, strict) return len(data) == 0